Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X A a (konfai.data.data_manager.BatchDataItem attribute) (konfai.data.data_manager.DataItem attribute) (konfai.data.patching.AugmentedStage attribute) accepts_attributes (konfai.metric.measure.CriterionWithAttribute attribute) accepts_init (konfai.metric.measure.CriterionWithInit attribute) Accumulator (class in konfai.data.patching) Accuracy (class in konfai.metric.measure) Add (class in konfai.network.blocks) add() (konfai.evaluator.Statistics method) (konfai.network.network.Measure.Loss method) add_layer() (konfai.data.patching.Accumulator method) (konfai.network.network.OutputsGroup method) (konfai.predictor.OutputDataset method) (konfai.predictor.OutSameAsGroupDataset method) add_module() (konfai.network.network.ModuleArgsDict method) apply() (konfai.network.network.Network method) apply_config() (in module konfai.utils.config) apply_read_plan() (konfai.data.patching.Patch method) apply_to_data_transform() (in module konfai.utils.ITK) apply_to_image_rigid_transform() (in module konfai.utils.ITK) Argmax (class in konfai.data.transform) ArgMax (class in konfai.network.blocks) assemble() (konfai.data.patching.Accumulator method) assert_konfai_install() (in module konfai) Attention (class in konfai.network.blocks) Attribute (class in konfai.utils.dataset) attribute (konfai.data.data_manager.BatchDataItem attribute) (konfai.data.data_manager.DataItem attribute) augmentation (konfai.data.patching.AugmentedStage attribute) augmented_data (konfai.data.patching.DatasetManager attribute) AugmentedStage (class in konfai.data.patching) autocast (konfai.predictor.Predictor attribute) AVGPOOL (konfai.network.blocks.DownsampleMode attribute) B backward() (konfai.network.network.Network method) BATCH (konfai.network.blocks.NormMode attribute) BatchDataItem (class in konfai.data.data_manager) BCE (class in konfai.metric.measure) best_score (konfai.trainer.EarlyStopping attribute) BlockConfig (class in konfai.network.blocks) box_with_mask() (in module konfai.utils.ITK) Brightness (class in konfai.data.augmentation) build_configured_criterions() (in module konfai.network.network) build_evaluate() (in module konfai.evaluator) build_predict() (in module konfai.predictor) build_train() (in module konfai.trainer) C cache_attributes (konfai.data.patching.DatasetManager attribute) calculate_fid() (konfai.metric.measure.FID static method) can_stream_patch() (konfai.data.patching.DatasetManager method) Canonical (class in konfai.data.transform) check_konfai_install() (in module konfai) check_server() (in module konfai) checkpoints_directory() (in module konfai) Choices (class in konfai.utils.config) clear() (konfai.network.network.OutputsGroup method) Clip (class in konfai.data.transform) clip_and_cast() (in module konfai.utils.ITK) ClipNormalize (class in konfai.network.blocks) cluster() (in module konfai.main) collate_konfai() (in module konfai.data.data_manager) ColorTransform (class in konfai.data.augmentation) combine (konfai.predictor.ModelComposite attribute) combine_classpath (konfai.predictor.Predictor attribute) compose_transform() (in module konfai.utils.ITK) compute() (konfai.data.augmentation.DataAugmentation method) compute_gram() (konfai.metric.measure.Gram static method) Concat (class in konfai.network.blocks) (class in konfai.predictor) concatenate_extend_slice (konfai.data.patching.PatchReadPlan attribute) Config (class in konfai.utils.config) config() (in module konfai.utils.config) config_file() (in module konfai) Const (class in konfai.network.blocks) Constant (class in konfai.metric.schedulers) constant_padding (konfai.data.patching.PatchReadPlan attribute) Contrast (class in konfai.data.augmentation) CONV_STRIDE (konfai.network.blocks.DownsampleMode attribute) CONV_TRANSPOSE (konfai.network.blocks.UpsampleMode attribute) ConvBlock (class in konfai.network.blocks) CosineAnnealing (class in konfai.metric.schedulers) Cosinus (class in konfai.data.patching) create_dictionary() (konfai.utils.config.Config method) Criterion (class in konfai.metric.measure) CriterionsAttr (class in konfai.network.network) CriterionsLoader (class in konfai.evaluator) (class in konfai.network.network) CriterionWithAttribute (class in konfai.metric.measure) CriterionWithInit (class in konfai.metric.measure) Crop (class in konfai.data.transform) CROP (konfai.data.transform.LocalityKind attribute) crop_with_mask() (in module konfai.utils.ITK) CrossEntropyLoss (class in konfai.metric.measure) cuda_visible_devices() (in module konfai) current_date() (in module konfai) CutOUT (class in konfai.data.augmentation) D Data (class in konfai.data.data_manager) data (konfai.data.data_manager.Data attribute) (konfai.data.patching.DatasetManager attribute) (konfai.data.patching.PathCombine attribute) data_log (konfai.predictor.Predictor attribute) data_slices (konfai.data.patching.PatchReadPlan attribute) data_to_file() (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) data_to_image() (in module konfai.utils.dataset) DataAugmentation (class in konfai.data.augmentation) DataAugmentationsList (class in konfai.data.augmentation) DataItem (class in konfai.data.data_manager) dataloader (konfai.evaluator.Evaluator attribute) DataMetric (class in konfai.data.data_manager) DataPrediction (class in konfai.data.data_manager) Dataset (class in konfai.utils.dataset) dataset (konfai.predictor.Predictor attribute) Dataset.AbstractFile (class in konfai.utils.dataset) Dataset.DicomFile (class in konfai.utils.dataset) Dataset.File (class in konfai.utils.dataset) Dataset.H5File (class in konfai.utils.dataset) Dataset.OmeZarrFile (class in konfai.utils.dataset) Dataset.SitkFile (class in konfai.utils.dataset) DatasetIter (class in konfai.data.data_manager) DatasetManager (class in konfai.data.patching) DatasetPatch (class in konfai.data.patching) datasets (konfai.data.data_manager.Data attribute) (konfai.data.transform.Transform attribute) DataTrain (class in konfai.data.data_manager) DecoderStage (class in konfai.network.blocks) Detach (class in konfai.network.blocks) Dice (class in konfai.metric.measure) dice_per_channel() (konfai.metric.measure.Dice static method) DiceSaveMap (class in konfai.metric.measure) Dilate (class in konfai.data.transform) disassemble() (konfai.data.patching.ModelPatch method) downsample() (in module konfai.network.blocks) DownsampleMode (class in konfai.network.blocks) dtype (konfai.data.transform.TensorCast attribute) E EarlyStopping (class in konfai.trainer) EarlyStoppingBase (class in konfai.trainer) Elastix (class in konfai.data.augmentation) enforce_zero_terminal_snr() (konfai.data.augmentation.Noise static method) EulerTransform (class in konfai.data.augmentation) eval() (konfai.network.network.Model method) evaluate() (in module konfai.evaluator) evaluations_directory() (in module konfai) Evaluator (class in konfai.evaluator) Exit (class in konfai.network.blocks) extra_repr() (konfai.network.blocks.MultiHeadSelfAttention method) (konfai.network.blocks.Permute method) (konfai.network.blocks.PositionalEmbedding method) (konfai.network.blocks.Unsqueeze method) F FID (class in konfai.metric.measure) FID.InceptionV3 (class in konfai.metric.measure) file_to_data() (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) file_to_data_slice() (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) file_to_data_statistics() (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) FlatLabel (class in konfai.data.transform) Flatten (class in konfai.data.transform) flatten() (konfai.metric.measure.Dice static method) flatten_transform() (in module konfai.utils.ITK) Flip (class in konfai.data.augmentation) (class in konfai.data.transform) FocalLoss (class in konfai.metric.measure) Foreign (class in konfai.data.augmentation) (class in konfai.data.transform) format_loss() (konfai.network.network.Measure method) format_mask_label() (in module konfai.utils.ITK) forward() (konfai.metric.measure.Accuracy method) (konfai.metric.measure.BCE method) (konfai.metric.measure.Criterion method) (konfai.metric.measure.CriterionWithAttribute method) (konfai.metric.measure.CrossEntropyLoss method) (konfai.metric.measure.Dice method) (konfai.metric.measure.DiceSaveMap method) (konfai.metric.measure.FID method) (konfai.metric.measure.FID.InceptionV3 method) (konfai.metric.measure.FocalLoss method) (konfai.metric.measure.GradientImages method) (konfai.metric.measure.Gram method) (konfai.metric.measure.IMPACTReg method) (konfai.metric.measure.IMPACTSynth method) (konfai.metric.measure.KLDivergence method) (konfai.metric.measure.L1LossRepresentation method) (konfai.metric.measure.MAESaveMap method) (konfai.metric.measure.MaskedLoss method) (konfai.metric.measure.Mean method) (konfai.metric.measure.MutualInformationLoss method) (konfai.metric.measure.PatchGanLoss method) (konfai.metric.measure.PerceptualLoss method) (konfai.metric.measure.SAM_Perceptual method) (konfai.metric.measure.SSIM method) (konfai.metric.measure.TRE method) (konfai.metric.measure.TripletLoss method) (konfai.metric.measure.Variance method) (konfai.metric.measure.WGP method) (konfai.network.blocks.Add method) (konfai.network.blocks.ArgMax method) (konfai.network.blocks.ClipNormalize method) (konfai.network.blocks.Concat method) (konfai.network.blocks.Const method) (konfai.network.blocks.Detach method) (konfai.network.blocks.Exit method) (konfai.network.blocks.GetShape method) (konfai.network.blocks.LatentDistribution.LatentDistributionDecoder method) (konfai.network.blocks.LatentDistribution.LatentDistributionLinear method) (konfai.network.blocks.LatentDistribution.LatentDistributionZ method) (konfai.network.blocks.MultiHeadSelfAttention method) (konfai.network.blocks.Multiply method) (konfai.network.blocks.Negative method) (konfai.network.blocks.NormalNoise method) (konfai.network.blocks.Permute method) (konfai.network.blocks.PositionalEmbedding method) (konfai.network.blocks.Print method) (konfai.network.blocks.Select method) (konfai.network.blocks.Subset method) (konfai.network.blocks.Unsqueeze method) (konfai.network.blocks.View method) (konfai.network.blocks.Write method) (konfai.network.network.ModuleArgsDict method) (konfai.network.network.Network method) (konfai.predictor.ModelComposite method) G Gaussian (class in konfai.data.patching) get_activation() (konfai.network.blocks.BlockConfig method) get_available_devices() (in module konfai) get_conv() (konfai.network.blocks.BlockConfig method) get_criterions() (konfai.evaluator.CriterionsLoader method) (konfai.network.network.CriterionsLoader method) get_data() (konfai.data.data_manager.Data method) (konfai.data.patching.DatasetManager method) (konfai.data.patching.Patch method) get_dataset_from_index() (konfai.data.data_manager.DatasetIter method) get_features() (konfai.metric.measure.FID static method) get_flat_label() (in module konfai.utils.ITK) get_group() (konfai.utils.dataset.Dataset method) (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) get_groups_dest() (konfai.data.data_manager.Data method) get_headers() (konfai.RemoteServer method) get_infos() (in module konfai.utils.dataset) (konfai.utils.dataset.Dataset method) (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) get_last_loss() (konfai.network.network.Measure.Loss method) get_last_lr() (konfai.metric.schedulers.PolyLRScheduler method) get_last_values() (konfai.network.network.Measure method) get_last_weights() (konfai.network.network.Measure method) get_layers() (konfai.network.network.Network method) get_loss() (konfai.metric.measure.PerceptualLoss.Module method) (konfai.network.network.Measure method) (konfai.network.network.Measure.Loss method) get_mapping() (konfai.network.network.ModuleArgsDict method) get_mask() (konfai.metric.measure.MaskedLoss static method) get_model() (konfai.network.network.ModelLoader method) get_module() (in module konfai.utils.utils) get_name() (konfai.metric.measure.Criterion method) (konfai.metric.measure.DiceSaveMap method) (konfai.metric.measure.IMPACTReg method) (konfai.metric.measure.MAESaveMap method) (konfai.metric.measure.Mean method) (konfai.metric.measure.Variance method) (konfai.network.network.Network method) get_names() (konfai.utils.dataset.Dataset method) (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) get_networks() (konfai.network.network.Network method) get_norm() (in module konfai.network.blocks) (konfai.network.blocks.BlockConfig method) get_np_array() (konfai.utils.dataset.Attribute method) get_optimizer() (konfai.network.network.OptimizerLoader method) get_output() (konfai.predictor.OutputDataset method) (konfai.predictor.OutSameAsGroupDataset method) get_output_dataset() (konfai.predictor.OutputDatasetLoader method) get_patch_config() (konfai.data.data_manager.DatasetIter method) get_patch_slices() (konfai.data.patching.Patch method) get_patch_slices_from_nb_patch_per_dim() (in module konfai.utils.utils) get_patch_slices_from_shape() (in module konfai.utils.utils) get_ram() (in module konfai) get_read_plan() (konfai.data.patching.Patch method) get_score() (konfai.trainer.EarlyStopping method) (konfai.trainer.EarlyStoppingBase method) get_size() (konfai.data.patching.DatasetManager method) (konfai.data.patching.Patch method) (konfai.utils.dataset.Dataset method) get_statistic() (konfai.evaluator.Statistics static method) get_statistics() (konfai.utils.dataset.Dataset method) get_targets_criterions() (konfai.evaluator.TargetCriterionsLoader method) (konfai.network.network.TargetCriterionsLoader method) get_tensor() (konfai.utils.dataset.Attribute method) get_torch_module() (in module konfai.network.blocks) get_transform() (konfai.data.transform.TransformLoader method) get_url() (konfai.RemoteServer method) get_value() (konfai.metric.schedulers.Constant method) (konfai.metric.schedulers.CosineAnnealing method) (konfai.metric.schedulers.Scheduler method) (konfai.utils.config.Config method) get_vram() (in module konfai) getschedulers() (konfai.network.network.LossSchedulersLoader method) (konfai.network.network.LRSchedulersLoader method) GetShape (class in konfai.network.blocks) GLOBAL_STAT (konfai.data.transform.LocalityKind attribute) Gradient (class in konfai.data.transform) GradientImages (class in konfai.metric.measure) Gram (class in konfai.metric.measure) Group (class in konfai.data.data_manager) GROUP (konfai.network.blocks.NormMode attribute) GroupMetric (class in konfai.data.data_manager) GroupTransform (class in konfai.data.data_manager) GroupTransformMetric (class in konfai.data.data_manager) H HALO (konfai.data.transform.LocalityKind attribute) halo (konfai.data.transform.PatchLocality attribute) HistogramMatching (class in konfai.data.transform) HUE (class in konfai.data.augmentation) I image_to_data() (in module konfai.utils.dataset) IMPACTReg (class in konfai.metric.measure) IMPACTReg.Weights (class in konfai.metric.measure) IMPACTSynth (class in konfai.metric.measure) IMPACTSynth.Weights (class in konfai.metric.measure) in_channels (konfai.network.network.ModuleArgsDict.ModuleArgs attribute) in_is_channel (konfai.network.network.ModuleArgsDict.ModuleArgs attribute) index (konfai.data.patching.AugmentedStage attribute) infer_entry() (konfai.data.transform.KonfAIInference method) InferenceStack (class in konfai.data.transform) init() (konfai.data.patching.DatasetPatch method) (konfai.data.patching.ModelPatch method) (konfai.data.patching.Patch method) (konfai.metric.measure.CriterionWithInit method) (konfai.metric.measure.KLDivergence method) (konfai.network.network.Measure method) (konfai.network.network.ModuleArgsDict method) (konfai.network.network.Network method) init_func() (konfai.network.network.ModuleArgsDict static method) init_outputs_group() (konfai.network.network.Network method) initialized() (konfai.network.network.Network method) INSTANCE (konfai.network.blocks.NormMode attribute) INSTANCE_AFFINE (konfai.network.blocks.NormMode attribute) inverse() (konfai.data.augmentation.DataAugmentation method) (konfai.data.transform.Canonical method) (konfai.data.transform.Crop method) (konfai.data.transform.Flip method) (konfai.data.transform.Normalize method) (konfai.data.transform.OneHot method) (konfai.data.transform.Padding method) (konfai.data.transform.Permute method) (konfai.data.transform.Resample method) (konfai.data.transform.ResampleTransform method) (konfai.data.transform.Squeeze method) (konfai.data.transform.Standardize method) (konfai.data.transform.TensorCast method) (konfai.data.transform.TransformInverse method) is_an_image() (in module konfai.utils.dataset) is_better() (konfai.trainer.EarlyStoppingBase method) is_dataset_exist() (konfai.utils.dataset.Dataset method) is_done() (konfai.network.network.OutputsGroup method) (konfai.predictor.OutputDataset method) is_empty() (konfai.data.patching.Accumulator method) is_exist() (konfai.utils.dataset.Dataset.AbstractFile method) (konfai.utils.dataset.Dataset.DicomFile method) (konfai.utils.dataset.Dataset.H5File method) (konfai.utils.dataset.Dataset.OmeZarrFile method) (konfai.utils.dataset.Dataset.SitkFile method) is_full() (konfai.data.patching.Accumulator method) (konfai.network.network.PatchIndexed method) is_group_exist() (konfai.utils.dataset.Dataset method) is_info() (konfai.utils.dataset.Attribute method) is_input (konfai.data.data_manager.BatchDataItem attribute) (konfai.data.data_manager.DataItem attribute) is_stopped() (konfai.trainer.EarlyStoppingBase method) is_vtk_polydata() (konfai.utils.dataset.Dataset.SitkFile method) is_windows_absolute_path() (in module konfai.utils.utils) items() (konfai.network.network.ModuleArgsDict method) K keys() (konfai.network.network.ModuleArgsDict method) kind (konfai.data.transform.PatchLocality attribute) KLDivergence (class in konfai.metric.measure) konfai module konfai.data module konfai.data.augmentation module konfai.data.data_manager module konfai.data.patching module konfai.data.transform module konfai.evaluator module konfai.main module konfai.metric module konfai.metric.measure module konfai.metric.schedulers module konfai.network module konfai.network.blocks module konfai.network.network module konfai.predictor module konfai.trainer module konfai.utils module konfai.utils.config module konfai.utils.dataset module konfai.utils.ITK module konfai.utils.utils module konfai_root() (in module konfai) konfai_state() (in module konfai) KonfAIInference (class in konfai.data.transform) KonfAIPackagesError L L1LossRepresentation (class in konfai.metric.measure) LatentDistribution (class in konfai.network.blocks) LatentDistribution.LatentDistributionDecoder (class in konfai.network.blocks) LatentDistribution.LatentDistributionLinear (class in konfai.network.blocks) LatentDistribution.LatentDistributionZ (class in konfai.network.blocks) LAYER (konfai.network.blocks.NormMode attribute) layers (konfai.network.network.OutputsGroup attribute) load() (konfai.data.augmentation.DataAugmentation method) (konfai.data.augmentation.Noise method) (konfai.data.data_manager.DatasetIter method) (konfai.data.patching.DatasetManager method) (konfai.data.patching.Patch method) (konfai.network.network.MinimalModel method) (konfai.network.network.Network method) (konfai.predictor.ModelComposite method) load_data() (konfai.data.data_manager.DatasetIter method) load_state_dict() (konfai.network.network.Network method) LocalityKind (class in konfai.data.transform) LossSchedulersLoader (class in konfai.network.network) LPIPS (class in konfai.metric.measure) LRSchedulersLoader (class in konfai.network.network) LumaFlip (class in konfai.data.augmentation) M MAE (class in konfai.metric.measure) MAESaveMap (class in konfai.metric.measure) main() (in module konfai.main) mapping (konfai.data.data_manager.Data attribute) Mask (class in konfai.data.augmentation) (class in konfai.data.transform) MaskedLoss (class in konfai.metric.measure) max (konfai.utils.config.Range attribute) maximize (konfai.metric.measure.Accuracy attribute) (konfai.metric.measure.Criterion attribute) (konfai.metric.measure.Dice attribute) MAXPOOL (konfai.network.blocks.DownsampleMode attribute) ME (class in konfai.metric.measure) Mean (class in konfai.data.patching) (class in konfai.metric.measure) (class in konfai.predictor) Measure (class in konfai.network.network) measure (konfai.network.network.Network attribute) Measure.Loss (class in konfai.network.network) Median (class in konfai.predictor) merge() (konfai.utils.config.Config method) MergeLabels (class in konfai.data.transform) metric_path (konfai.evaluator.Evaluator attribute) metrics (konfai.evaluator.Evaluator attribute) min (konfai.utils.config.Range attribute) min_delta (konfai.trainer.EarlyStopping attribute) MinimalModel (class in konfai.network.network) mode (konfai.trainer.EarlyStopping attribute) (konfai.trainer.EarlyStoppingBase attribute) Model (class in konfai.network.network) model (konfai.metric.measure.IMPACTReg attribute) (konfai.metric.measure.SAM_Perceptual attribute) (konfai.predictor.Predictor attribute) model_content (konfai.metric.measure.IMPACTSynth attribute) model_ema (konfai.trainer.Trainer attribute) model_style (konfai.metric.measure.IMPACTSynth attribute) ModelComposite (class in konfai.predictor) ModelLoader (class in konfai.network.network) ModelPatch (class in konfai.data.patching) models (konfai.metric.measure.PerceptualLoss attribute) module konfai konfai.data konfai.data.augmentation konfai.data.data_manager konfai.data.patching konfai.data.transform konfai.evaluator konfai.main konfai.metric konfai.metric.measure konfai.metric.schedulers konfai.network konfai.network.blocks konfai.network.network konfai.predictor konfai.trainer konfai.utils konfai.utils.config konfai.utils.dataset konfai.utils.ITK konfai.utils.utils ModuleArgsDict (class in konfai.network.network) ModuleArgsDict.ModuleArgs (class in konfai.network.network) modules_loss (konfai.metric.measure.IMPACTReg attribute) (konfai.metric.measure.PerceptualLoss attribute) monitor (konfai.trainer.EarlyStopping attribute) MSE (class in konfai.metric.measure) MultiHeadSelfAttention (class in konfai.network.blocks) Multiply (class in konfai.network.blocks) MutualInformationLoss (class in konfai.metric.measure) N n (konfai.metric.measure.Accuracy attribute) name (konfai.data.data_manager.BatchDataItem attribute) (konfai.data.data_manager.DataItem attribute) named_forward() (konfai.network.network.ModuleArgsDict method) (konfai.network.network.Network method) named_module_args_dict() (konfai.network.network.ModuleArgsDict method) named_parameters() (konfai.network.network.ModuleArgsDict method) Negative (class in konfai.network.blocks) NetState (class in konfai.network.network) Network (class in konfai.network.network) Noise (class in konfai.data.augmentation) NONE (konfai.network.blocks.NormMode attribute) Norm (class in konfai.data.transform) norm (konfai.network.blocks.BlockConfig attribute) Normalize (class in konfai.data.transform) normalize() (konfai.metric.measure.LPIPS static method) NormalNoise (class in konfai.network.blocks) NormMode (class in konfai.network.blocks) O OneHot (class in konfai.data.transform) optimizer (konfai.network.network.Network attribute) OptimizerLoader (class in konfai.network.network) ORIENTATION (konfai.data.transform.LocalityKind attribute) out_channels (konfai.network.network.ModuleArgsDict.ModuleArgs attribute) out_is_channel (konfai.network.network.ModuleArgsDict.ModuleArgs attribute) OutputDataset (class in konfai.predictor) OutputDatasetLoader (class in konfai.predictor) outputs_criterions (konfai.network.network.Measure attribute) outputs_dataset (konfai.predictor.Predictor attribute) OutputsGroup (class in konfai.network.network) outputsGroup (konfai.network.network.Network attribute) OutSameAsGroupDataset (class in konfai.predictor) overlap (konfai.data.patching.PathCombine attribute) override_lr (konfai.trainer.Trainer attribute) P p (konfai.data.data_manager.BatchDataItem attribute) (konfai.data.data_manager.DataItem attribute) Padding (class in konfai.data.transform) parametermap_to_transform() (in module konfai.utils.ITK) parameters() (konfai.network.network.ModuleArgsDict method) parzen_windowing() (konfai.metric.measure.MutualInformationLoss method) parzen_windowing_gaussian() (konfai.metric.measure.MutualInformationLoss method) Patch (class in konfai.data.patching) patch_combine (konfai.data.patching.ModelPatch attribute) patch_locality() (konfai.data.augmentation.DataAugmentation method) (konfai.data.patching.AugmentedStage method) (konfai.data.patching.Stage method) (konfai.data.transform.Argmax method) (konfai.data.transform.Canonical method) (konfai.data.transform.Clip method) (konfai.data.transform.Crop method) (konfai.data.transform.Dilate method) (konfai.data.transform.FlatLabel method) (konfai.data.transform.Flip method) (konfai.data.transform.Gradient method) (konfai.data.transform.MergeLabels method) (konfai.data.transform.Normalize method) (konfai.data.transform.OneHot method) (konfai.data.transform.Percentage method) (konfai.data.transform.Permute method) (konfai.data.transform.Resample method) (konfai.data.transform.SegmentationDisagreement method) (konfai.data.transform.SelectLabel method) (konfai.data.transform.Softmax method) (konfai.data.transform.StandardDeviation method) (konfai.data.transform.Standardize method) (konfai.data.transform.Sum method) (konfai.data.transform.TensorCast method) (konfai.data.transform.Transform method) (konfai.data.transform.UnNormalize method) (konfai.data.transform.Variance method) patch_slices (konfai.data.patching.Accumulator attribute) PatchGanLoss (class in konfai.metric.measure) PatchIndexed (class in konfai.network.network) PatchLocality (class in konfai.data.transform) PatchReadPlan (class in konfai.data.patching) PathCombine (class in konfai.data.patching) patience (konfai.trainer.EarlyStopping attribute) Percentage (class in konfai.data.transform) PerceptualLoss (class in konfai.metric.measure) PerceptualLoss.Module (class in konfai.metric.measure) Permute (class in konfai.data.augmentation) (class in konfai.data.transform) (class in konfai.network.blocks) POINTWISE (konfai.data.transform.LocalityKind attribute) PolyLRScheduler (class in konfai.metric.schedulers) pop() (konfai.utils.dataset.Attribute method) pop_np_array() (konfai.utils.dataset.Attribute method) pop_tensor() (konfai.utils.dataset.Attribute method) PositionalEmbedding (class in konfai.network.blocks) predict() (in module konfai.predictor) PREDICTION (konfai.network.network.NetState attribute) predictions_directory() (in module konfai) PredictionSubset (class in konfai.data.data_manager) Predictor (class in konfai.predictor) prepare() (konfai.data.augmentation.DataAugmentationsList method) (konfai.data.data_manager.Data method) (konfai.data.data_manager.GroupTransform method) (konfai.predictor.OutputDataset method) preprocess_images() (konfai.metric.measure.FID static method) preprocessing() (konfai.metric.measure.IMPACTReg method) (konfai.metric.measure.LPIPS static method) (konfai.metric.measure.PerceptualLoss method) (konfai.metric.measure.SAM_Perceptual method) preserves_statistics (konfai.data.transform.LocalityKind property) (konfai.data.transform.PatchLocality attribute) Print (class in konfai.network.blocks) Prob (class in konfai.data.augmentation) PSNR (class in konfai.metric.measure) R Range (class in konfai.utils.config) read() (konfai.evaluator.Statistics method) read_data() (konfai.utils.dataset.Dataset method) read_data_slice() (konfai.utils.dataset.Dataset method) read_data_statistics() (konfai.utils.dataset.Dataset method) read_image() (konfai.utils.dataset.Dataset method) read_landmarks() (in module konfai.utils.dataset) read_transform() (konfai.utils.dataset.Dataset method) Reduction (class in konfai.predictor) reflect_padding (konfai.data.patching.PatchReadPlan attribute) RemoteServer (class in konfai) requires_infos() (konfai.data.data_manager.Subset method) Resample (class in konfai.data.transform) resample_isotropic() (in module konfai.utils.ITK) resample_itk() (in module konfai.utils.ITK) resample_region() (konfai.data.transform.Resample method) resample_resize() (in module konfai.utils.ITK) resample_source_region() (konfai.data.transform.Resample method) ResampleToResolution (class in konfai.data.transform) ResampleToShape (class in konfai.data.transform) ResampleTransform (class in konfai.data.transform) ResBlock (class in konfai.network.blocks) RESCALE (konfai.data.transform.LocalityKind attribute) reset_augmentation() (konfai.data.data_manager.DatasetIter method) (konfai.data.patching.DatasetManager method) reset_loss() (konfai.network.network.Measure method) (konfai.network.network.Measure.Loss method) (konfai.network.network.Network method) reset_state() (konfai.data.augmentation.DataAugmentation method) ResidualBlockD (class in konfai.network.blocks) ResidualStage (class in konfai.network.blocks) ResNetBasicBlock (class in konfai.network.blocks) ResNetStage (class in konfai.network.blocks) resolve() (konfai.utils.config.Choices method) Rotate (class in konfai.data.augmentation) run_process() (konfai.evaluator.Evaluator method) (konfai.predictor.Predictor method) (konfai.trainer.Trainer method) S safe_dtype_cast() (konfai.data.transform.TensorCast static method) SAM_Perceptual (class in konfai.metric.measure) Saturation (class in konfai.data.augmentation) Save (class in konfai.data.transform) Scale (class in konfai.data.augmentation) scaler (konfai.network.network.Measure attribute) Scheduler (class in konfai.metric.schedulers) schedulers (konfai.network.network.CriterionsAttr attribute) (konfai.network.network.Network attribute) SegmentationDisagreement (class in konfai.data.transform) Select (class in konfai.network.blocks) SelectLabel (class in konfai.data.transform) set_datasets() (konfai.data.augmentation.DataAugmentation method) (konfai.data.augmentation.DataAugmentationsList method) (konfai.data.data_manager.GroupTransform method) (konfai.data.transform.Transform method) (konfai.predictor.OutputDataset method) set_lr() (konfai.trainer.Trainer method) set_model() (konfai.trainer.Trainer method) set_models() (konfai.predictor.Predictor method) set_name() (konfai.network.network.Network method) set_patch_config() (konfai.data.patching.PathCombine method) (konfai.predictor.OutputDataset method) set_state() (konfai.network.network.Network method) setup() (konfai.evaluator.Evaluator method) (konfai.predictor.OutputDataset method) (konfai.predictor.OutSameAsGroupDataset method) (konfai.predictor.Predictor method) (konfai.trainer.Trainer method) shapes (konfai.data.patching.DatasetManager attribute) Softmax (class in konfai.data.transform) split_format_level() (in module konfai.utils.utils) split_path_spec() (in module konfai.utils.utils) Squeeze (class in konfai.data.transform) SSIM (class in konfai.metric.measure) Stage (class in konfai.data.patching) StandardDeviation (class in konfai.data.transform) Standardize (class in konfai.data.transform) stat_channels (konfai.data.transform.PatchLocality attribute) stat_keys (konfai.data.transform.PatchLocality attribute) state_dict() (konfai.network.network.Network method) state_init() (konfai.data.augmentation.DataAugmentation method) Statistics (class in konfai.data.transform) (class in konfai.evaluator) statistics_directory() (in module konfai) statistics_preserving (konfai.data.transform.PatchLocality property) statistics_train (konfai.evaluator.Evaluator attribute) statistics_validation (konfai.evaluator.Evaluator attribute) step() (konfai.metric.schedulers.PolyLRScheduler method) (konfai.metric.schedulers.Scheduler method) stop() (konfai.trainer.EarlyStoppingBase method) stream_region_source() (konfai.data.augmentation.DataAugmentation method) (konfai.data.patching.AugmentedStage method) (konfai.data.patching.Stage method) (konfai.data.transform.Canonical method) (konfai.data.transform.Crop method) (konfai.data.transform.Flip method) (konfai.data.transform.Permute method) (konfai.data.transform.Transform method) Subset (class in konfai.data.data_manager) (class in konfai.network.blocks) Sum (class in konfai.data.transform) supports_dataloader_workers (konfai.data.transform.KonfAIInference attribute) (konfai.data.transform.Transform attribute) SYNCBATCH (konfai.network.blocks.NormMode attribute) T TargetCriterionsLoader (class in konfai.evaluator) (class in konfai.network.network) tensor (konfai.data.data_manager.BatchDataItem attribute) (konfai.data.data_manager.DataItem attribute) TensorCast (class in konfai.data.transform) to() (konfai.data.data_manager.DatasetIter method) (konfai.data.data_manager.GroupTransform method) (konfai.network.network.Network static method) (konfai.predictor.OutputDataset method) ToChannels (class in konfai.network.blocks) ToFeatures (class in konfai.network.blocks) TRAIN (konfai.network.network.NetState attribute) train() (in module konfai.trainer) (konfai.network.network.Model method) Trainer (class in konfai.trainer) TrainSubset (class in konfai.data.data_manager) Transform (class in konfai.data.transform) transform_shape() (konfai.data.transform.Canonical method) (konfai.data.transform.Crop method) (konfai.data.transform.Flatten method) (konfai.data.transform.Norm method) (konfai.data.transform.Padding method) (konfai.data.transform.Permute method) (konfai.data.transform.Resample method) (konfai.data.transform.ResampleToResolution method) (konfai.data.transform.ResampleToShape method) (konfai.data.transform.ResampleTransform method) (konfai.data.transform.Squeeze method) (konfai.data.transform.Transform method) TransformInverse (class in konfai.data.transform) TransformLoader (class in konfai.data.transform) Translate (class in konfai.data.augmentation) TRE (class in konfai.metric.measure) TripletLoss (class in konfai.metric.measure) U UNetPlusPlusNode (class in konfai.network.blocks) unload() (konfai.data.patching.DatasetManager method) unload_augmentation() (konfai.data.patching.DatasetManager method) unload_data() (konfai.data.data_manager.DatasetIter method) UnNormalize (class in konfai.data.transform) Unsqueeze (class in konfai.network.blocks) update() (konfai.evaluator.Evaluator method) (konfai.network.network.Measure method) update_lr() (konfai.network.network.Network method) update_scheduler() (konfai.network.network.Measure method) UPSAMPLE (konfai.network.blocks.UpsampleMode attribute) upsample() (in module konfai.network.blocks) UpsampleMode (class in konfai.network.blocks) V values() (konfai.network.network.ModuleArgsDict method) Variance (class in konfai.data.transform) (class in konfai.metric.measure) View (class in konfai.network.blocks) W Warmup (class in konfai.metric.schedulers) warmup() (konfai.metric.schedulers.Warmup static method) WGP (class in konfai.metric.measure) WHOLE_VOLUME (konfai.data.transform.LocalityKind attribute) WindowedCaseSampler (class in konfai.data.data_manager) worst_score (konfai.trainer.EarlyStoppingBase property) Write (class in konfai.network.blocks) write() (konfai.evaluator.Statistics method) (konfai.utils.dataset.Dataset method) write_landmarks() (in module konfai.utils.dataset) write_prediction() (konfai.predictor.OutputDataset method) write_stream_cache_attribute() (konfai.data.patching.AugmentedStage method) (konfai.data.patching.Stage method) (konfai.data.transform.Canonical method) (konfai.data.transform.Crop method) (konfai.data.transform.Resample method) (konfai.data.transform.ResampleToResolution method) (konfai.data.transform.ResampleToShape method) (konfai.data.transform.Transform method) X x (konfai.data.data_manager.BatchDataItem attribute) (konfai.data.data_manager.DataItem attribute)
KonfAI